Below is the lecture schedule. All lectures are in 130 CNRB at 1:00 pm. The lecture topics and lecturer are subject to change, but the dates and times are set. Readings listed under each lecture should be read before lecture. Some readings are marked as optional, though you are encouraged to read all of the posted materials. The readings will be updated as the term progresses.
Scheduled office hours for the TAs to help you with your homework will be decided during the first week of class.
Assignment/due dates
- Homework 1 assign Th 10/10, due Th 10/24
- Homework 2 assign Th 10/24, due Th 11/07
- Homework 3 assign Th 11/07, due Th 11/21
- Homework 4 assign Tue 11/21, due Fri 12/06
- News and Views assign Tues 10/01, due at 11:59 PM, Fri 12/13
All problem sets are submitted as Jupyter notebooks, and the News & Views article is submitted as a PDF. All are submitted via Canvas.
Lecture Schedule
- L1: Tu 10/01: Intro to Protein Engineering (SLM)
- Romero and Arnold, 2009 (optional)
- Thorn et al., 1995 (optional)
- Debler et al., 2005 (optional)
- Hu et al., 2004 (optional)
- Privett et al., 2012 (optional)
- Blomberg et al., 2013 (optional)
- Ogbunugafor, 2020 (optional)
- Maynard Smith, 1970 (optional)
- Patel and Loeb, 2000 (optional)
- Bloom et al., 2005 (optional)
- L2: Th 10/03: (NAP)
- L3: Tu 10/08: (NAP)
- L4: Th 10/10: (NAP)
- L5: Tu 10/15: (NAP)
- L6: Th 10/17: (NAP)
- L7: Tu 10/22: (NAP)
- L8: Th 10/24: (NAP)
- L9: Tu 10/29: (NAP)
- L10: Th 10/31: (NAP)
- L11: Tu 11/05: (SLM)
- L12: Th 11/07: (SLM)
- L13: Tu 11/12: (SLM)
- L14: Th 11/14: Bioscience Industry Day 12-3pm
- L15: Tu 11/19: (SLM)
- L16: Th 11/21: (SLM)
- L17: Tu 11/26: (SLM)
- L18: Tu 12/03: (SLM)
- L19: Th 12/05: (SLM)
Sequences and Structures from lecture that you can play around with on NUPACK.